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Publications

Genomic epidemiology and longitudinal sampling of ward wastewater environments and patients reveals complexity of the transmission dynamics of bla KPC-carbapenemase-producing Enterobacterales in a hospital setting.

Stoesser N. et al, (2024), JAC Antimicrob Resist, 6

Detecting changes in population trends in infection surveillance using community SARS-CoV-2 prevalence as an exemplar.

Pritchard E. et al, (2024), Am J Epidemiol

SARS-CoV-2, influenza A/B and respiratory syncytial virus positivity and association with influenza-like illness and self-reported symptoms, over the 2022/23 winter season in the UK: a longitudinal surveillance cohort.

Dietz E. et al, (2024), BMC Med, 22

Risk of SARS-CoV-2 reinfection during multiple Omicron variant waves in the UK general population.

Wei J. et al, (2024), Nat Commun, 15

The plasmidome associated with Gram-negative bloodstream infections: a large-scale observational study using complete plasmid assemblies

Lipworth S. et al, (2024), Nature Communications

Quantitative measurement of antibiotic resistance in Mycobacterium tuberculosis reveals genetic determinants of resistance and susceptibility in a target gene approach.

CRyPTIC Consortium None., (2024), Nat Commun, 15

Persistence of SARS-CoV-2 antibodies over 18 months following infection: UK Biobank COVID-19 Serology Study.

Bešević J. et al, (2023), J Epidemiol Community Health

Swab pooling enables rapid expansion of high-throughput capacity for SARS-CoV-2 community testing.

Fagg J. et al, (2023), J Clin Virol, 167

Performance of antigen lateral flow devices in the UK during the alpha, delta, and omicron waves of the SARS-CoV-2 pandemic: a diagnostic and observational study.

Eyre DW. et al, (2023), Lancet Infect Dis, 23, 922 - 932

Performance of self-collected saliva samples for SARS-CoV-2 mass testing in community settings

Kay O. et al, (2023), Journal of Clinical Virology Plus, 3

Risk of SARS-CoV-2 reinfection during multiple Omicron variant waves in the UK general population

Wei J. et al, (2023)

Protection against SARS-CoV-2 Omicron BA.4/5 variant following booster vaccination or breakthrough infection in the UK.

Wei J. et al, (2023), Nat Commun, 14

Bedaquiline and clofazimine resistance in Mycobacterium tuberculosis: an in-vitro and in-silico data analysis.

Sonnenkalb L. et al, (2023), Lancet Microbe, 4, e358 - e368

The quality of vital signs measurements and value preferences in electronic medical records varies by hospital, specialty, and patient demographics.

Jackson N. et al, (2023), Sci Rep, 13

Improving the representativeness of UK’s national COVID-19 Infection Survey through spatio-temporal regression and post-stratification

Pouwels KB. et al, (2023)

Antibiotic review kit for hospitals (ARK-Hospital): a stepped-wedge cluster-randomised controlled trial.

Llewelyn MJ. et al, (2023), Lancet Infect Dis, 23, 207 - 221

Evaluation of Nanopore sequencing for Mycobacterium tuberculosis drug susceptibility testing and outbreak investigation: a genomic analysis.

Hall MB. et al, (2023), Lancet Microbe, 4, e84 - e92

Comparison of R9.4.1/Kit10 and R10/Kit12 Oxford Nanopore flowcells and chemistries in bacterial genome reconstruction.

Sanderson ND. et al, (2023), Microb Genom, 9

Defining normal inflammatory marker and vital sign responses to suspected bloodstream infection in adults with positive and negative blood cultures

Gu Q. et al, (2023)

Exploring the extent of uncatalogued genetic variation in antimicrobial resistance gene families inEscherichia coli

Lipworth S. et al, (2023)

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