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Publications

Where do those data go? Reuse of screening results from clinical trials to estimate population prevalence of HBV infection in adults in Kilifi, Kenya.

Downs LO. et al, (2023), J Virus Erad, 9

New SARS-CoV-2 Omicron Variant with Spike Protein Mutation Y451H, Kilifi, Kenya, March-May 2023.

Mwanga MJ. et al, (2023), Emerg Infect Dis, 29, 2376 - 2379

Symptom prevalence and secondary attack rate of SARS-CoV-2 in rural Kenyan households: A prospective cohort study.

Gallagher KE. et al, (2023), Influenza Other Respir Viruses, 17

Temporal distribution and clinical characteristics of the Alpha, Delta and Omicron SARS-CoV-2 variants of concern in Laikipia, Kenya: institutional and community-based genomic surveillance

W. Lambisia A. et al, (2023)

A pan-African pathogen genomics data sharing platform to support disease outbreaks.

Christoffels A. et al, (2023), Nat Med, 29, 1052 - 1055

High-throughput sequencing approaches applied to SARS-CoV-2

Ong'era EM. et al, (2023), Wellcome Open Research, 8, 150 - 150

Toward a global virus genomic surveillance network.

Hill V. et al, (2023), Cell Host Microbe

Characterising paediatric mortality during and after acute illness in Sub-Saharan Africa and South Asia: a secondary analysis of the CHAIN cohort using a machine learning approach.

Childhood Acute Illness and Nutrition (CHAIN) Network None., (2023), EClinicalMedicine, 57

SARS-CoV-2 Omicron variant of concern in the Seychelles: Introduction and spread

Morobe JM. et al, (2023), Wellcome Open Research, 8, 105 - 105

Detection of a SARS-CoV-2 Beta-like variant in coastal Kenya after more than a year of disappearance

Lambisia AW. et al, (2023), Wellcome Open Research, 8, 34 - 34

A systematic review of Hepatitis B virus (HBV) prevalence and genotypes in Kenya: Data to inform clinical care and health policy.

Downs LO. et al, (2023), PLOS Glob Public Health, 3

Genomic epidemiology of human adenovirus F40 and F41 in coastal Kenya: A retrospective hospital-based surveillance study (2013-2022).

Lambisia AW. et al, (2023), Virus Evol, 9

Symptom prevalence and Secondary Attack Rate of SARS-CoV-2 in Rural Kenyan Households: a prospective cohort study

Gallagher K. et al, (2023)

Global disparities in SARS-CoV-2 genomic surveillance

DYE C., (2022), Nature Communications

Temporal distribution and clinical characteristics of the Alpha, Delta and Omicron SARS-CoV-2 variants of concern in Laikipia, Kenya: institutional and community-based genomic surveillance

W. Lambisia A. et al, (2022), Wellcome Open Research, 7, 235 - 235

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance.

Tegally H. et al, (2022), Science

Genomic epidemiology of Human Adenovirus F40 and F41 in Coastal Kenya: A retrospective hospital-based surveillance study (2013-2022)

Lambisia A. et al, (2022)

Optimization of the SARS-CoV-2 ARTIC Network V4 Primers and Whole Genome Sequencing Protocol.

Lambisia AW. et al, (2022), Front Med (Lausanne), 9

The genomic epidemiology of SARS-CoV-2 variants of concern in Kenya

Githinji G. et al, (2022)

Whole-genome sequencing of SARS-CoV-2 isolates from symptomatic and asymptomatic individuals in Tanzania.

Mziray SR. et al, (2022), Front Med (Lausanne), 9

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